Researcher interests: Computational biology: transcriptional regulation, genomics, computational epigenomics and chromatin. Machine learning and algorithms.
DEPARTMENT: Computer Science

Selected Publications

avital sarusi portuguez, dana raz, ivana grbesa, Tomer Kaplan, michal schwartz, moran tal, myonghee sung, ofir hakim, olga loza, rachel t deitch, ran weismann, tomer kaplan
gene activation and repression by the glucocorticoid receptor are mediated by sequestering ep300 and two modes of chromatin binding (2019)| bioRxiv| Read more
aliza chase, avital sarusi portugez, bracha zukerman attia, Tomer Kaplan, michal schwartz, miriam tannenbaum, ofir hakim, olga loza, tomer kaplan, yousef turman, Zaidoun Salah
genomic retargeting of tumor suppressors p53 and ctcf promotes oncogenesis (2019)| bioRxiv| Read more
aviad zick, Ayelet Rahat, benjamin glaser, daniel neiman, david planer, dayana yaish, Yuval Dor , eithan galun, Nir Friedman, gavriel fialkoff, guy meler, ilana foxfisher, israa sharkia, Tomer Kaplan, Mor Nitzan, ronen sadeh, ruth shemer, samir abugazala, zahala kamari
chip seq of plasma cell free nucleosomes identifies cell of origin gene expression programs (2019)| bioRxiv| Read more
ahmed a radwan, avital pushett, hana benchetrit, Tomer Kaplan, kirill makedonski, michal inbar, mohammad jaber, noa renous, noam maoz, rachel lasry, Oren RAM, shulamit sebban, tomer kaplan, valery zayat, yosef buganim, zvi zakheim
direct induction of the three pre implantation blastocyst cell types from fibroblasts (2019)| Cell Stem Cell| Read more
einan farhi, fania shemuluvich, Tomer Kaplan, ramon y birnbaum, reut bar yaacov, reut eshel, tomer kaplan
functional characterization of the zeb2 regulatory landscape (2018)| Human Molecular Genetics| Read more
a m james shapiro, albert grinshpun, amit korach, aviad zick, avigail dreazan wittenberg, benjamin glaser, daniel neiman, Yuval Dor , endre kiss, giora landesberg, hai zemmour, henrik druid, joshua moss, judith magenheim, Tomer Kaplan, kengyeh fu, kirsty l spalding, markus grompe, Myriam Maoz, netanel loyfer, peter arner, ruth shemer, yaacov samet
comprehensive human cell type methylation atlas reveals origins of circulating cell free dna in health and disease (2018)| Nature Communications| Read more
a m james shapiro, albert grinshpun, amit korach, aviad zick, avigail dreazan wittenberg, benjamin glaser, daniel neiman, Yuval Dor , endre kiss, giora landesberg, hai zemmour, henrik druid, joshua moss, judith magenheim, Tomer Kaplan, keng yeh fu, kirsty l spalding, markus grompe, Myriam Maoz, netanel loyfer, peter arner, ruth shemer, tomer kaplan, yaacov samet
comprehensive human cell type methylation atlas reveals origins of circulating cell free dna in health and disease (2018)| Nature Communications| Read more
dario g lupianez, fania shmulevich, idit dahan, Tomer Kaplan, naama hirsch, noam levaot, ramon y birnbaum, reut bar yaacov, reut eshel, tal shahar, tomer kaplan
unraveling the transcriptional regulation of twist1 in limb development (2018)| PLOS Genetics| Read more
guangxiang zhu, hailin hu, jian peng, jianyang zeng, jinglin yang, Tomer Kaplan, rui ma, sai zhang, tomer kaplan, wenxuan deng
reconstructing spatial organizations of chromosomes through manifold learning (2018)| Nucleic Acids Research| Read more
dikla cohn, Tomer Kaplan, Or Zuk
enhancer identification using transfer and adversarial deep learning of dna sequences (2018)| bioRxiv| Read more
avital steimanshimony, Michael Berger, eliran arbib, eran rosenthal, Tomer Kaplan, leonor cohendaniel, Liron Argaman, Hanah Margalit, yuval malka
post transcriptional 3 utr cleavage of mrna transcripts generates thousands of stable uncapped autonomous rna fragments (2017)| Nature Communications| Read more
binyamin kaffe, divya m sivaraman, eran meshorer, jose d aguilera, Tomer Kaplan, Sharon Schlesinger, shai melcer
a hyperdynamic h3 3 nucleosome marks promoter regions in pluripotent embryonic stem cells (2017)| Nucleic Acids Research| Read more

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