Researcher interests: Systems Biology of Transcription and Chromatin, Transcription regulation, Chromatin modifications, systematic yeast genetics.
FACULTY / SCHOOL: Faculty of Science

Selected Publications

alon appleboim, avital kleinbrill, daphna josephstrauss, Nir Friedman
dynamics of chromatin and transcription during transient depletion of the rsc chromatin remodeling complex (2019)| Cell Reports| Read more
Nir Friedman, Mor Nitzan, nikolaus rajewsky, nikos karaiskos
charting a tissue from single cell transcriptomes (2018)| bioRxiv| Read more
Aviv Regev, carl boer, eeshit dhaval vaishnav, esteban luis abeyta, Nir Friedman, ronen sadeh
deciphering eukaryotic cis regulatory logic with 100 million random promoters (2018)| bioRxiv| Read more
Nir Friedman, jenia gutin, maya schuldiner, meytal radzinski, nadav shai, Yaakov Nahmias, Ohad Yogev, Tomer Ravid, Dana Reichmann, rosi fassler, sabina tsytkinkirschenzweig, sidra ilyas, tommer ravid, William Breuer, yifat geffen
temporal profiling of redox dependent heterogeneity in single cells (2018)| eLife| Read more
Aviv Regev, carl boer, Nir Friedman, ronen sadeh
deciphering cis regulatory logic with 100 million random promoters (2018)| bioRxiv| Read more
adi alajem, avital kleinbrill, daphna josephstrauss, Nir Friedman, jenia gutin, nitzan bodenheimer, Oren RAM, ronen sadeh
fine resolution mapping of tf binding and chromatin interactions (2018)| Cell Reports| Read more
alon appleboim, caitlin connelly, christoph muller, daniel bolon, Nir Friedman, hadas jacobi, hsin jung chou, hsuiyi chen, nebiyu abshiru, neil kelleher, oliver rando, paul kaufman, paul thomas, thomas miller, upasna sharma, vineeta bajaj, yuanyuan chen, yuichi ichikawa, yupeng zheng
a synthetic biology approach to probing nucleosome symmetry (2017)| eLife| Read more
elie jami, Nir Friedman, itzhak mizrahi
compositional and functional dynamics of the bovine rumen methanogenic community across different developmental stages (2017)| Environmental Microbiology| Read more
benmeir, edith yosef, Nir Friedman, itzhak mizrahi, miron, nikbachat, shaani
effect of wheat hay particle size and replacement of wheat hay with wheat silage on rumen ph rumination and digestibility in ruminally cannulated non lactating cows (2017)| Animal| Read more
alon appleboim, Nir Friedman, Tomer Ravid, richard gardner, ronen sadeh, tommer ravid, yifat geffen
mapping the landscape of a eukaryotic degronome (2016)| Molecular Cell| Read more
basak uygun, Daniel Kitsberg, david bomze, elishai ezra, ella sklan, Nir Friedman, Gahl Levy, joerg schlaak, korkut uygun, maria angela guzzardi, Merav Cohen, Yaakov Nahmias, naomi habib, oren shibolet, timm, trippler
nuclear receptors control pro viral and antiviral metabolic responses to hepatitis c virus infection ()| Nature Chemical Biology| Read more
ben gold, eran shriker, eytan ruppin, Nir Friedman, itzhak mizrahi, raphy zarecki, thomer durman
diet induced changes of redox potential underlie compositional shifts in the rumen archaeal community ()| Environmental Microbiology| Read more
atray dixit, Aviv Regev, biyu, britt adamson, charles fulco, danielle dionne, eric lander, Nir Friedman, jenny chen, jonathan weissman, livnat jerbyarnon, nemanja marjanovic, Oren Parnas, raktima raychowdhury, thomas norman, tyler burks
perturb seq dissecting molecular circuits with scalable single cell rna profiling of pooled genetic screens ()| PMC| Read more
atray dixit, Aviv Regev, biyu, britt adamson, charles fulco, danielle dionne, eric lander, Nir Friedman, jenny chen, jonathan weissman, livnat jerbyarnon, nemanja marjanovic, Oren Parnas, raktima raychowdhury, thomas norman, tyler burks
perturb seq dissecting molecular circuits with scalable single cell rna profiling of pooled genetic screens ()| Cell| Read more
Alon Goren, andreas gnirke, anne thielke, assaf weiner, Aviv Regev, bang wong, bradley bernstein, brian minie, chad nusbaum, chamutal bornstein, christine cheng, daniela amannzalcenstein, dennis friedrich, Nir Friedman, Ido Amit, james meldrim, james robinson, Manuel Garber, mitchell guttman, nicolas chevrier, nir hacohen, Nir Yosef, raktima raychowdhury, Oren RAM, ronnie blechergonen, sheila fisher, zohar itzhaki
a high throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals ()| Elsevier| Read more
Alon Goren, andreas gnirke, anne thielke, assaf weiner, Aviv Regev, bang wong, bradley bernstein, brian minie, chad nusbaum, chamutal bornstein, christine cheng, daniela amannzalcenstein, dennis friedrich, Nir Friedman, Ido Amit, james meldrim, james robinson, Manuel Garber, mitchell guttman, nicolas chevrier, nir hacohen, Nir Yosef, raktima raychowdhury, Oren RAM, ronnie blechergonen, sheila fisher, zohar itzhaki
a high throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals ()| Molecular Cell| Read more

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